Installation

1. Install Conda and create a virtual environment with python==3.11:

   conda create -n scProca python==3.11
   conda activate scProca
   

2. Install PyTorch in the virtual environment. If you have an NVIDIA GPU, make sure to install a version of PyTorch that supports it. PyTorch performs much faster with an NVIDIA GPU. For maximum compatibility, we currently recommend installing pytorch==2.3.1.

3. Install scProca from GitHub:

   git clone git://github.com/xiongbiolab/scProca.git
   cd scProca
   pip install .
   

Reproducibility

Replication code for the research paper is available at https://github.com/ZzzsHuqiaAao/scProca-reproducibility .